Vidjil: open-source and licenses

Vidjil is open-source, released under GNU GPLv3+ license. You are welcome to redistribute it under certain conditions. This software is for research use only and comes with no warranty.

The development code is available on http://gitlab.vidjil.org/. Bug reports, issues and patches are welcome.

Third-party software and licenses

Vidjil provide ready to use docker containers for server install that contains third party software/libraries under open-source licenses.

vidjil-client

Software and libraries included in Vidjil repository

bioseq.js : fast and lightweight javascript library for affine-gap local and banded global pairwise alignment (Smith-Waterman) * @version d8adcf1 (2019-08-08) * @author Heng Li (lh3) * @link https://github.com/lh3/bioseq-js * @license MIT

d3-v3 : framework svg * @version 5.14.1 (2019) * @author Michael Bostock * @link http://d3js.org/ * @license BSD

jQuery : fast, small, and feature-rich JavaScript library * @version 3.3.1 (2018-01-20) * @author John Resig and jQuery team * @link http://jquery.org * @license MIT * @compatibility IE 9+, Chrome (x-1)+, Firefox (x-1)+, Safari (x-1)+, Opera x+ x is "current version" at time of release => 2.1.1: => 3.x:

file.js : load/save cross-navigator * @version (<= 2014) * @author Eli Grey * @link http://eligrey.com * @license MIT

jstree : distant file explorator * @version 3.3.3 (2016-10-31) * @author Ivan Bozhanov * @link https://www.jstree.com/ * @license MIT

less : dynamic stylesheet * @version less-1.5.0 * @author Alexis Sellier * @link self@cloudhead.net / http://lesscss.org/ * @license Apache v2

qunit.js : Unit testing * @version 2.9.1 (2019-01-07) * @author QUnit team (Trent Willis et al) * @link http://qunitjs.com/ * @license MIT

qunit-tap.js : TAP Output Producer Plugin for QUnit * @version 1.5.1 (2016-06-20) * @author Takuto Wada * @link https://github.com/twada/qunit-tap * @license MIT/GPLv2

require.js : JavaScript file and module loader * @version 2.3.6 (2018-08-27) * @author The Dojo Foundation All Rights Reserved. * @link http://jrburke.com / http://requirejs.org/ * @license MIT * @compatibility IE 6+, Firefox 2+, Safari 3.2+, Chrome 3+, Opera 10+

svgExport.js : Export SVG to PNG * @author Nikita Rokotyan, adapted by the Vidjil Team * @version retrieven on 2018-09-14 * @link http://bl.ocks.org/Rokotyan/0556f8facbaf344507cdc45dc3622177 * @license MIT

tsne.js : Implementation of TSNE algorithm * @version 2d62a1c4 (2015-10-13) * @author Andrej Karpathy * @link https://github.com/karpathy/tsnejs * @license MIT

Base docker image

nginx:1.15.0 : docker image used as base for vidjil-client docker image * @license BSD

Additional packages installed in the image

wget * @license GPLv3 * @link https://www.gnu.org/software/wget/

make * @license GPLv3 * @link https://www.gnu.org/software/make/

unzip * @license BSD like * @link ftp://ftp.info-zip.org/pub/infozip/UnZip.html

git * @license GPLv2 * @link https://git-scm.com/about

curl * @license MIT/X like * @link https://curl.se/docs/copyright.html

fcgiwrap * @license MIT * @link https://github.com/gnosek/fcgiwrap

vidjil-server

Software and libraries included in Vidjil repository

web2py : python CMS * @author Massimo Di Pierro & al * @link http://www.web2py.com/init/default/license * @license LGPLv3

Base docker image

ubuntu 18.04 : docker image used as base for vidjil-server docker image * @license https://ubuntu.com/licensing

Additional packages installed in the image

wget * @license GPLv3 * @link https://www.gnu.org/software/wget/

make * @license GPLv3 * @link https://www.gnu.org/software/make/

unzip * @license BSD like * @link ftp://ftp.info-zip.org/pub/infozip/UnZip.html

git * @license GPLv2 * @link https://git-scm.com/about

curl * @license MIT/X like * @link https://curl.se/docs/copyright.html

fcgiwrap * @license MIT * @link https://github.com/gnosek/fcgiwrap

cron * @license GPLv2+ * @link http://changelogs.ubuntu.com/changelogs/pool/main/c/cron/cron_3.0pl1-136ubuntu2/copyright

python * @license open/GPL compatible * @link https://docs.python.org/3/license.html

ipython * @license BSD3 * @link https://github.com/ipython/ipython/blob/master/LICENSE

python-cffi * @license MIT * @link https://pypi.org/project/cffi/

python-ijson * @license BSD * @link https://pypi.org/project/ijson/

python-enum34 * @license BSD * @link https://pypi.org/project/enum34/

python-requests * @license Apache License 2.0 * @link https://pypi.org/project/requests/

gosu * @license Apache License 2.0 * @link https://github.com/tianon/gosu/blob/master/LICENSE

libyajl2 * @license ISC * @link https://metadata.ftp-master.debian.org/changelogs//main/y/yajl/yajl_2.1.0-2_copyright

gnupg * @license GPLv3 * @link https://gnupg.org/

apt-utils * @license GPLv2+ * @link https://packages.ubuntu.com/bionic/apt-utils

pyuwsgi * @license GPLv2 * @link https://pypi.org/project/pyuwsgi/